AI and Zotero: an overview of the best plugins

The combination of Zotero with AI-supported plugins opens up new possibilities for scientific research and analysis. I have already described one of these tools in my article ’The top Zotero extensions I can't live without".

Here I present the best AI tools that can extend Zotero - including information on costs and supported models. And if you're technically minded, you'll also find a DIY guide at the end to build your own language model based on your library.

1. ARIA: Intelligent research and analysis

Zotero minimum version: 6.0 or higher

Supported LLMs: ChatGPT-4, ChatGPT-4 Turbo

Cost: Free of charge; however, a fee for ChatGPT Plusis needed for full functionality

The AI Research Assistant, A.R.I.A. for short, extends Zotero with AI-supported search and analysis options. Particularly useful for extensive libraries, ARIA allows you to ask specific questions of the database and receive context-based answers. With OpenAI-GPT-4, the plugin provides quick orientation for specific topics.

aria-prompt-library in Zotero

Reproduced from lifan0127's "ai-research-assistant"



2. Zotero-chatPDF: Interactive PDF analysis

Zotero minimum version: 7.0+

Supported LLMs: ChatGPT-3.5+, Claude, Gemini, Llama, Phi, Gemma, Mistral...

Cost: free; needs ChatGPT Plus subscription


Zotero-ChatPDF (also ZoteroChat) enables conversation-based analysis of PDFs directly in Zotero. Researchers can ask specific questions about document content without having to read through the entire document, which saves time and helps to find key information more quickly.

Zotero-chatpdf also stands out because it supports a large number of LLMs: ChatGPT, Gemini, Claude Sonnet, Meta Llama, Microsoft Phi, Google Gemma and Mistral. The extension also offers completely free LLMs that can be run locally. Unfortunately, this is currently only possible for Mac users.


ZoteroChat - Chat local PDFs seemlessly with the best AI in Zotero - citation styler

The homepage of zoterochat.com


3. AskYourPDF: Ask specific questions to PDFs

Zotero minimum version: 6.0 or higher

Supported LLMs: ChatGPT, Claude

Cost: Free version with limited access; requires ChatGPT Plus subscription for full access

AskYourPDF is a tool that allows targeted communication with the content of saved PDFs. Researchers can ask questions about the PDF content and have relevant passages displayed, which is particularly helpful for complex texts. This makes it easier to work on specific topics and large PDF files. AskYourPdf is also available as a mobile phone app and as a browser extension (Chrome) and can therefore provide a comprehensive solution.


AskYourPdf in Zotero - Citation Styler

Reproduced from https://github.com/AskYourPdf/zotero_plugin

Download & Information: AskYourPdf for Zotero


4. Scite for Zotero - Enrich your library

Zotero minimum version: 6.0 or higher

Supported LLMs: Scite verwendet eigene NLP-Algorithmen und unterstützt kein externes LLM

Cost: Partly free of charge, but extended functions require a paid subscription


Scite is a platform for finding and evaluating scientific articles via Smart Citations. Smart Citations allows users to see how a publication has been cited by providing the context of the citation and a classification describing whether it provides supporting or contrasting evidence for the cited claim. Scite can therefore help  relevant papers, to rate an article's quality and inform about new publications in your field of research. Scite for Zotero Plugin can do this directly in Zotero. On the one hand, you can see the metadata classification of a paper and then via a right click on "Scite Report" will be redirected directly to Scite.

Scite is like a ChatGPT that you can ask questions. It shows you which papers it has accessed and what it ‘thinks’ about them. You can ask questions like ‘What is the evidence for ginger tea for colds?’ and it will tell you. I would definitely recommend using the trial to see if you like Scite.


scite for Zotero

Reproduced from scitedotai's "Scite for Zoter Plug-in"


5. DIY guide for your own LLM based on the Zotero database

Required LLM Tools: OpenAI API or other LLM platform of your choice

Supported LLMs: 6.0 or higher

Cost: Chargeable depending on the platform used; API fees for GPT-4 may apply

Target group: Researchers with advanced technical knowledge (Python)


For specialised requirements, it is possible to create your own LLM based on your Zotero library. A detailed guide by Emmett McFarlane on Medium describes how to create and set up a customised AI model based on your own Zotero database.

from pyzotero import zotero

from openai import OpenAI

import chromadb

# Initialize ChomaDB

chroma_client = chromadb.PersistentClient(path="chromadb")

collection = chroma_client.get_or_create_collection(name="zotero_papers")


# Initialize LLM client

llm_client = OpenAI(

base_url=os.environ["LLM_SERVER_BASE_URL"],

api_key=os.environ["LLM_SERVER_API_KEY"],

)


# Initialize Zotero client for user (use group id and "group" for group libraries)

zot = zotero.Zotero(

library_id=os.environ.get("ZOTERO_USER_ID"),

library_type="user",

api_key=os.environ.get("ZOTERO_API_KEY")

)


Summary

With the AI plugins presented, Zotero becomes a platform for AI-supported literature management. The tools enable efficient analyses, citation evaluations and interaction with PDF content, making everyday scientific work easier. Researchers can retrieve specific information, recognise relevant literature and even create their own language model - a comprehensive extension of traditional literature management.


Further reading

'}}
Advantages of CSL & Zotero
CSL in combination with Zotero allows you to cite correctly and create your bibliography. Here you can find out why this combo is so powerful.
'}}
Using Zotero and CSL citation styles
Zotero and CSL citation styles. In this guide, you will learn how to use Zotero and citation styles effectively.
'}}
Correct literature research and citation at the FOM University of Applied Sciences with Zotero
Master literature research and citation at the FOM with Zotero! Easily organise your sources and automatically generate citations and bibliographies.
'}}
German citation style: Cite correctly with Zotero
Literature research and citation according to German citation style done right, thanks to Zotero and CSL citation template. Here I show you how to do it.

© Citation Styler. All rights reserved. 2024